Ropacus_carveme_grampos 2020-12-11 23:36
Independent Section Contains tests that are independent of the class of modeled organism, a model's complexity or types of identifiers that are used to describe its components. Parameterization or initialization of the network is not required. See readme for more details.

Consistency

Unbounded Flux In Default Medium
71.1%

A large fraction of model reactions able to carry unlimited flux under default conditions indicates problems with reaction directionality, missing cofactors, incorrectly defined transport reactions and more. Implementation: Without changing the default constraints run flux variability analysis. From the FVA results identify those reactions that carry flux equal to the model's maximal or minimal flux.

A fraction of 28.88% of the non-blocked reactions (in total 162 reactions) can carry unbounded flux in the default model condition. Unbounded reactions may be involved in thermodynamically infeasible cycles: 4HOXPACt2pp, ABUTt2pp, ABUTt2r, ACACT1r, ACACT2r, ...



Annotation - Metabolites


Annotation - Reactions


Annotation - Genes


Annotation - SBO Terms





Total Score
39%
Score per Category
0%10%20%30%40%50%60%70%80%90%100%scoreconsistencyannotation_metannotation_rxnannotation_geneannotation_sbosection
Specific Section Covers general statistics and specific aspects of a metabolic network that are not universally applicable. See readme for more details.
SBML
Basic Information
Metabolite Information
Reaction Information
Gene-Protein-Reaction (GPR) Associations
Biomass
Energy Metabolism
Network Topology
Matrix Conditioning
Experimental Data Comparison
Misc. Tests
Environment